GEO

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This tool functions as a Model Context Protocol (MCP) server, designed to give researchers, bioinformaticians, and developers streamlined access to the extensive Gene Expression Omnibus (GEO) data repository. It harnesses the NCBI E-Utils API to facilitate real-time searching and retrieval of high-throughput functional genomics data, including gene expression profiles, curated datasets, experimental series, individual samples, and microarray platform definitions. This direct integration enables seamless incorporation of GEO data into AI/ML workflows, custom applications, and automated data pipelines, significantly enhancing bioinformatics research and analysis.

Características Principales

• Offers interfaces via both MCP stdio protocol and a dedicated HTTP API.
• Utilizes the NCBI E-Utils API for direct, real-time data retrieval.
• Configurable with an optional NCBI API key for higher request rate limits.
• Accesses multiple GEO databases: Profiles, DataSets, Series, Samples, and Platforms.
• 3 GitHub stars
• Enables automated data acquisition for bioinformatics projects.

Casos de Uso

• Integrate GEO data seamlessly into AI/ML workflows through the MCP.
• Automate the retrieval of gene expression data for diverse research projects.
• Build custom applications that require real-time access to functional genomics data.