Samtools
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0Standardizes the interface for working with SAM/BAM/CRAM files through a Model Control Protocol implementation.
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Samtools provides a standardized interface for working with SAM/BAM/CRAM files through a Model Control Protocol (MCP) implementation. It offers tools for viewing, converting, sorting, indexing, and merging alignment files, as well as calculating read depth and generating statistics. With support for Docker installation and local configuration, Samtools facilitates efficient and streamlined genomic data analysis.
Características Principales
- Handles SAM, BAM, and CRAM alignment files
- Offers multi-threaded operations for sorting and merging
- Generates comprehensive alignment statistics
- Converts between SAM, BAM, and CRAM formats
- Filters reads based on SAM flags
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Casos de Uso
- Generating statistics for quality control and paired-end metrics
- Optimizing performance through multi-threaded sorting and merging
- Analyzing specific genomic regions in alignment files
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