Can I manage bioinformatics files like FASTQ or VCF with this skill?

Absolutely. The skill includes core capabilities for uploading, downloading, searching, and organizing all types of genomic data objects.

How does this skill help with app deployment?

It assists in creating app skeletons, configuring dxapp.json, managing dependencies (including Docker), and executing deployment commands like 'dx build'.

Does this skill support the dxpy Python SDK?

Yes, it provides detailed guidance and implementation patterns for using the dxpy library for programmatic platform access and automation.

What is the primary use of the DNAnexus Integration skill?

It is used to build, deploy, and manage genomics applications and data on the DNAnexus cloud platform directly through Claude Code's interface.

Can I monitor running jobs or workflows?

Yes, the skill provides patterns for launching jobs, monitoring execution status, and handling subjobs for parallel processing.

DNAnexus Genomics Integration

Name: DNAnexus Genomics Integration
Author: jimmc414

byjimmc414

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324

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Ciencia de Datos y ML

Streamlines the development, deployment, and management of bioinformatics pipelines and data on the DNAnexus cloud genomics platform.

This skill empowers Claude to interact natively with the DNAnexus platform, a leading environment for biomedical data analysis and genomics. It provides comprehensive support for building and deploying apps and applets, managing large-scale genomic data objects such as FASTQ, BAM, and VCF files, orchestrating complex workflows, and utilizing the dxpy Python SDK for automated pipeline execution. Whether you are configuring dxapp.json specifications, managing cloud project permissions, or monitoring parallel job executions, this skill ensures Claude adheres to domain-specific best practices for high-performance cloud bioinformatics.

Características Principales

01Job orchestration and monitoring for multi-step analysis workflows

02Full Python SDK (dxpy) integration for programmatic platform interaction

03Comprehensive data lifecycle management for genomic files and records

04Automated DNAnexus app/applet skeleton generation and deployment patterns

05324 GitHub stars

06Dependency management including Docker integration and resource configuration

Casos de Uso

01Automating batch processing and parallel execution of genomic analyses

02Managing and searching large-scale sequencing datasets across cloud projects

03Building and deploying custom variant calling or sequence alignment pipelines

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add jimmc414/kosmos dnanexus-integration

For use in Claude.ai and ChatGPT

Download Skill