Is this suitable for large-scale sequencing data?

Yes, it is designed to handle common bioinformatics formats like FASTQ, BAM, and VCF, offering patterns for batch processing and project organization.

Does it support Docker and custom tool configuration?

Absolutely. The skill provides guidance on configuring dxapp.json, managing system dependencies, and integrating Docker containers for complex environments.

What is the DNAnexus Integration skill for Claude?

It is a specialized capability that provides Claude with the domain knowledge to help developers build, deploy, and manage bioinformatics tools and data on the DNAnexus cloud platform.

Can this skill help me write dxpy Python scripts?

Yes, it includes comprehensive patterns and references for the dxpy Python SDK to automate file uploads, job launches, and data searches.

How do I authenticate with DNAnexus when using this skill?

The skill provides instructions for using the 'dx login' command to authenticate your session, ensuring Claude can help you manage your projects and data securely.

DNAnexus Genomics Integration

Name: DNAnexus Genomics Integration
Author: Microck

byMicrock

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Infraestructura en la Nube

Facilitates the development, deployment, and management of bioinformatics pipelines on the DNAnexus cloud genomics platform.

This skill empowers Claude to act as a specialized assistant for the DNAnexus platform, a leading environment for biomedical data analysis. It provides comprehensive support for building custom apps and applets, managing large-scale genomic data objects, orchestrating complex workflows, and utilizing the dxpy Python SDK. Whether you are automating file uploads, configuring dxapp.json for Docker-based pipelines, or monitoring parallel job execution, this skill offers the specific patterns and best practices needed to streamline bioinformatics development and data science operations.

Características Principales

01Standardized patterns for batch processing and multi-step analysis pipelines.

02Streamlined workflow orchestration and job monitoring via the dxpy Python SDK.

03Automated DNAnexus app and applet development using dx-app-wizard patterns.

04Advanced configuration support for dxapp.json, including dependency and Docker management.

05Comprehensive data management for genomic files including FASTQ, BAM, and VCF.

0681 GitHub stars

Casos de Uso

01Building and deploying production-grade variant calling or alignment pipelines.

02Scaling bioinformatics analyses through parallel job execution and subjob management.

03Automating the organization and metadata tagging of sequencing data across projects.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills dnanexus-integration

For use in Claude.ai and ChatGPT

Download Skill