Do I need a special license to use this LabArchives skill?

Yes, you require an enterprise LabArchives license with API access enabled and credentials provided by your institutional administrator.

Is it possible to back up notebooks including all file attachments?

Yes, the skill provides specific operations to perform full notebook backups that can include or exclude attachments based on your storage requirements.

How are API credentials managed securely?

The skill utilizes a configuration script to create a local config.yaml file, allowing you to manage your access keys and passwords outside of your primary code.

Which third-party scientific tools can be integrated?

The skill facilitates workflows involving Jupyter, REDCap, Protocols.io, GraphPad Prism, SnapGene, and several other scientific software platforms.

Can this skill work with LabArchives servers outside the US?

Yes, it supports regional API endpoints for Australia (AU) and the United Kingdom (UK) in addition to the standard International/US endpoint.

LabArchives Integration

Name: LabArchives Integration
Author: x-cmd

byx-cmd

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Ciencia de Datos y ML

Automates electronic lab notebook workflows by managing entries, attachments, and backups through the LabArchives REST API.

Acerca de

This skill enables programmatic interaction with the LabArchives electronic lab notebook (ELN) platform, allowing researchers and developers to automate data documentation and management. It provides a comprehensive set of tools for authenticating across regional endpoints, retrieving user and notebook metadata, performing full notebook backups, and managing entry components like text and file attachments. By bridging the gap between computational environments and formal lab records, this skill streamlines scientific data management and ensures research compliance through automated reporting and third-party integrations with platforms like REDCap, Jupyter, and Protocols.io.

Características Principales

Regional API endpoint configuration for US, UK, and AU instances
8 GitHub stars
Automated full notebook backups with optional attachment inclusion
Seamless integration workflows for Jupyter, REDCap, and Protocols.io
Programmatic entry creation and multi-format file attachment management
Institutional site reporting and usage analytics for compliance auditing

Casos de Uso

Generating institutional compliance reports to track engagement and usage across a research organization.
Automating the upload of experimental results from local scripts to an electronic lab notebook.
Scheduling encrypted backups of entire research notebooks for long-term data preservation.

Acerca de

Características Principales

Regional API endpoint configuration for US, UK, and AU instances
8 GitHub stars
Automated full notebook backups with optional attachment inclusion
Seamless integration workflows for Jupyter, REDCap, and Protocols.io
Programmatic entry creation and multi-format file attachment management
Institutional site reporting and usage analytics for compliance auditing

Casos de Uso

Generating institutional compliance reports to track engagement and usage across a research organization.
Automating the upload of experimental results from local scripts to an electronic lab notebook.
Scheduling encrypted backups of entire research notebooks for long-term data preservation.