How does the skill handle different levels of schema violations?

It categorizes feedback into three severity levels: ENFORCED (violations causing build failures), ADVISORY (documented conventions), and TECH-DEBT (known issues in existing code).

What is the primary purpose of the LinkML Reviewer skill?

It provides specialized guidance for reviewing and proposing changes to LinkML schema files (.yaml), specifically tailored for the Alliance of Genome Resources curation model.

Can I use this for non-AGR LinkML projects?

While it is optimized for the Alliance of Genome Resources (AGR) schema, many of its LinkML best practices and architectural checks are applicable to other biological data modeling projects.

Does this skill check for naming conventions?

Yes, it advises on naming conventions such as CamelCase for classes, snake_case for slots, and specific suffixes for Data Transfer Objects (DTOs) like _curie or _dto.

Does the skill require external data to work?

The skill is designed to read local reference files in the repository to understand the current schema inventory, inheritance tree, and import graph before performing a review.

LinkML Schema Reviewer

Name: LinkML Schema Reviewer
Author: alliance-genome

byalliance-genome

•

Gestión de Bases de Datos

Automates the review and validation of LinkML schema files to ensure consistency, correctness, and convention compliance.

The linkml-review skill provides Claude Code with specialized expertise for auditing and proposing changes to LinkML schemas, particularly within the Alliance of Genome Resources ecosystem. It helps developers maintain complex data models by enforcing naming conventions, validating DTO suffix patterns, and checking inheritance hierarchies. By distinguishing between enforced build requirements and advisory best practices, the skill ensures that schema modifications are both technically sound and aligned with domain-specific standards for biological data curation.

Características Principales

01Validation of DTO suffix patterns for curies, identifiers, and inlined objects.

021 GitHub stars

03Verification of schema boilerplate, imports, and inheritance chains.

04Intelligent categorization of feedback into Enforced, Advisory, and Tech-Debt levels.

05Contextual checks for proper Enum, OntologyTerm, and VocabularyTerm usage.

06Automated enforcement of CamelCase classes and snake_case slot naming conventions.

Casos de Uso

01Reviewing Pull Requests that modify complex .yaml schema files in biological databases.

02Identifying and documenting technical debt in legacy LinkML data models.

03Proposing new schema classes or slots that must align with existing DTO patterns.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add alliance-genome/agr_claude_code linkml-review

For use in Claude.ai and ChatGPT

Características Principales

01Validation of DTO suffix patterns for curies, identifiers, and inlined objects.

021 GitHub stars

03Verification of schema boilerplate, imports, and inheritance chains.

04Intelligent categorization of feedback into Enforced, Advisory, and Tech-Debt levels.

05Contextual checks for proper Enum, OntologyTerm, and VocabularyTerm usage.

06Automated enforcement of CamelCase classes and snake_case slot naming conventions.

Casos de Uso

01Reviewing Pull Requests that modify complex .yaml schema files in biological databases.

02Identifying and documenting technical debt in legacy LinkML data models.

03Proposing new schema classes or slots that must align with existing DTO patterns.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add alliance-genome/agr_claude_code linkml-review

For use in Claude.ai and ChatGPT