Does it support the latest Opentrons API version?

Yes, it defaults to Protocol API v2.19 (or the latest available) to ensure compatibility with modern labware and robot firmware.

Can I use this to simulate protocols before running them?

Yes, the skill includes patterns for simulating protocols and using conditional logic to check if the code is running in a simulation environment.

Does this skill support both Opentrons Flex and OT-2?

Yes, it provides specific configurations and pipette definitions for both the newer Flex platform and the classic OT-2 robot.

Can Claude help me control hardware modules like the thermocycler?

Absolutely. The skill includes full support for the Thermocycler Module, Heater-Shaker, Magnetic Module, and Temperature Module API commands.

Opentrons Lab Automation

Name: Opentrons Lab Automation
Author: jimmc414

byjimmc414

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324

Ciencia de Datos y ML

Automates laboratory workflows by writing and simulating Opentrons Python Protocol API v2 for Flex and OT-2 robots.

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The Opentrons Integration skill empowers Claude to act as a digital lab assistant for autonomous scientific discovery. It provides deep domain expertise in the Opentrons Python Protocol API v2, enabling the creation of complex liquid handling protocols for Flex and OT-2 robots. The skill covers everything from deck layout and labware management to precise hardware control of thermocyclers, heater-shakers, and magnetic modules. By bridging the gap between computational experimental design and physical execution, it allows researchers to automate high-throughput tasks like PCR setup, serial dilutions, and plate replication with AI-optimized efficiency.

Características Principales

Advanced liquid handling logic including serial dilutions and transfers
324 GitHub stars
Protocol simulation support to verify logic before robot execution
Comprehensive hardware module control for thermocyclers and heater-shakers
Dynamic labware management and deck layout optimization
Python Protocol API v2 code generation for Flex and OT-2 hardware

Casos de Uso

Designing high-throughput serial dilutions and plate replication protocols
Orchestrating autonomous discovery cycles using AI-driven experimental design
Automating complex PCR setup and NGS library preparation workflows

Acerca de

Características Principales

Advanced liquid handling logic including serial dilutions and transfers
324 GitHub stars
Protocol simulation support to verify logic before robot execution
Comprehensive hardware module control for thermocyclers and heater-shakers
Dynamic labware management and deck layout optimization
Python Protocol API v2 code generation for Flex and OT-2 hardware

Casos de Uso

Designing high-throughput serial dilutions and plate replication protocols
Orchestrating autonomous discovery cycles using AI-driven experimental design
Automating complex PCR setup and NGS library preparation workflows