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The PyOpenMS skill provides a specialized Python interface for computational mass spectrometry, enabling Claude to assist with complex LC-MS/MS workflows. It supports a wide range of tasks including reading and converting standard file formats like mzML and FASTA, performing spectral signal processing, detecting features for quantification, and managing peptide or protein identification results. This skill is particularly useful for bioinformaticians and data scientists who need to build automated pipelines, integrate MS data with the Python scientific stack (Pandas, NumPy, Scikit-learn), or perform untargeted metabolomics analysis with high precision.
