Does it work for non-code projects?

Yes, it is designed for both code and non-code projects, including ontologies, schemas, curated content, and data analyses.

What are the CLI development standards?

Every library should include a CLI built with Typer or Click, using standardized flags like -i/--input and -o/--output with a fail-fast approach to exceptions.

What is the preferred Python stack for this skill?

The skill favors 'uv' for dependency management, 'ruff' for linting and formatting, and 'pydantic' for data modeling.

What templates does this skill support?

It supports the LinkML project copier, Monarch initiative code copier, and the Ontology Development Kit (ODK) for bio-ontologies.

How does it handle documentation standards?

It promotes Markdown and the Diátaxis framework, utilizing MkDocs for site generation and ensures examples can double as integration tests.

BBOP GitHub Repo Standards

Name: BBOP GitHub Repo Standards
Author: berkeleybop

byberkeleybop

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開発者ツール

Standardizes GitHub repository creation and maintenance using BBOP group best practices and modern Python development stacks.

概要

This skill provides comprehensive guidance for creating and maintaining high-quality repositories that align with Mungall group (BBOP) standards for both code and non-code projects. It automates and enforces the use of specialized copier templates for LinkML, code, and ontologies, while integrating modern tools like uv for dependency management and ruff for linting. Whether migrating legacy projects or starting new ones, the skill ensures rigorous engineering practices including TDD, typed parameters, comprehensive CLI development, and automated documentation following the Diátaxis framework.

主な機能

Implements specialized copier templates for LinkML, ontologies, and code projects
Standardizes Python stacks using uv, ruff, and pydantic for data modeling
Enforces test-driven development (TDD) with pytest, doctests, and vcrpy
Automates CLI development using typer/click with standardized I/O conventions
Manages GitHub workflows including PR management, branch logic, and metadata tagging
8 GitHub stars

ユースケース

Initializing a new LinkML schema or Monarch-initiative style code repository
Migrating a legacy project to use modern dependency management (uv) and linting (ruff)
Standardizing repository documentation using the Diátaxis framework and MkDocs

概要

主な機能

Implements specialized copier templates for LinkML, ontologies, and code projects
Standardizes Python stacks using uv, ruff, and pydantic for data modeling
Enforces test-driven development (TDD) with pytest, doctests, and vcrpy
Automates CLI development using typer/click with standardized I/O conventions
Manages GitHub workflows including PR management, branch logic, and metadata tagging
8 GitHub stars

ユースケース

Initializing a new LinkML schema or Monarch-initiative style code repository
Migrating a legacy project to use modern dependency management (uv) and linting (ruff)
Standardizing repository documentation using the Diátaxis framework and MkDocs