Does this skill require a Benchling account?

Yes, you need an active Benchling tenant URL and valid credentials—either an API key for scripts or OAuth client credentials for apps—to use this integration.

Does it support bulk operations?

Yes, it leverages the Benchling Python SDK's built-in support for pagination, generators, and batch updates to handle large-scale data operations efficiently.

Benchling is a cloud-based platform specifically designed for life sciences R&D, serving as a centralized registry, inventory manager, and electronic lab notebook.

Is it possible to query the Data Warehouse?

Yes, the skill provides documentation on how to connect to the Benchling Data Warehouse using SQL for analytics, reporting, and historical data export.

Can I manage physical inventory with this skill?

Absolutely. The skill supports managing physical samples, including creating containers and boxes, updating contents, and performing transfers between storage locations.

Benchling Integration

Name: Benchling Integration
Author: Microck

byMicrock

•

生産性とワークフロー

Integrates Claude with the Benchling R&D platform to automate life sciences data management, registry entities, and laboratory workflows.

概要

This skill empowers Claude to interact directly with the Benchling cloud platform, facilitating the programmatic management of biological entities like DNA and protein sequences, laboratory inventory, and electronic lab notebook (ELN) entries. It provides standardized patterns for using the Benchling Python SDK and REST API, enabling researchers and developers to automate complex R&D workflows, perform bulk data migrations, and sync experimental results with external systems or the Benchling Data Warehouse. By providing specific guidance on authentication, schema mapping, and event-driven architectures, it streamlines the development of Benchling Apps and lab automation scripts.

主な機能

Comprehensive Registry Management for DNA, RNA, and protein sequences
Automated Inventory Control for samples, containers, and location transfers
Electronic Lab Notebook (ELN) entry creation and documentation automation
89 GitHub stars
Workflow Task Management for orchestrating complex laboratory processes
Event-driven integration support via AWS EventBridge for real-time syncing

ユースケース

Generating and updating experiment documentation directly from code
Automating the bulk import of FASTA sequences into the Benchling Registry
Building custom automation for tracking sample movements across lab locations

概要

主な機能

Comprehensive Registry Management for DNA, RNA, and protein sequences
Automated Inventory Control for samples, containers, and location transfers
Electronic Lab Notebook (ELN) entry creation and documentation automation
89 GitHub stars
Workflow Task Management for orchestrating complex laboratory processes
Event-driven integration support via AWS EventBridge for real-time syncing

ユースケース

Generating and updating experiment documentation directly from code
Automating the bulk import of FASTA sequences into the Benchling Registry
Building custom automation for tracking sample movements across lab locations