What authentication methods are supported?

This skill supports both API Key authentication for scripts and OAuth 2.0 Client Credentials for applications.

Can I manage physical lab samples with this skill?

Yes, it includes capabilities for managing containers, boxes, locations, and performing bulk transfers within Benchling's inventory.

How does it handle workflow automation?

You can programmatically create workflow tasks, update statuses, assign users, and monitor progress using the integrated Python SDK.

Is it possible to sync data to external databases?

Yes, the skill outlines patterns for event-driven integration via AWS EventBridge and querying the Benchling Data Warehouse for external analytics.

Does it support biological sequence management?

Absolutely. It provides tools for creating, updating, and registering DNA, RNA, and AA sequences with full schema field support.

Benchling Integration

Name: Benchling Integration
Author: Activer007

byActiver007

データサイエンスとML

Integrates Benchling's life sciences R&D platform to automate lab data management, registry entities, and inventory workflows.

概要

This skill enables developers to interact programmatically with the Benchling cloud platform using its Python SDK and REST API. It provides comprehensive support for managing biological entities like DNA and protein sequences, automating inventory operations such as sample transfers and container management, and documenting experiments via electronic lab notebook (ELN) entries. Ideal for bioinformaticians and R&D engineers, it streamlines lab automation, workflow task management, and data synchronization between Benchling and external systems via AWS EventBridge and the Data Warehouse.

主な機能

Manages physical inventory including containers, boxes, and locations
Controls workflow tasks and triggers event-driven laboratory automations
Creates and updates Electronic Lab Notebook (ELN) entries and templates
Facilitates data synchronization with the Benchling Data Warehouse via SQL
0 GitHub stars
Automates Registry management for DNA, RNA, and protein sequences

ユースケース

Automating bulk sequence imports and registry registration from FASTA files
Building custom Benchling Apps for automated workflow task status updates
Managing lab inventory audits and physical sample tracking across locations

概要

主な機能

Manages physical inventory including containers, boxes, and locations
Controls workflow tasks and triggers event-driven laboratory automations
Creates and updates Electronic Lab Notebook (ELN) entries and templates
Facilitates data synchronization with the Benchling Data Warehouse via SQL
0 GitHub stars
Automates Registry management for DNA, RNA, and protein sequences

ユースケース

Automating bulk sequence imports and registry registration from FASTA files
Building custom Benchling Apps for automated workflow task status updates
Managing lab inventory audits and physical sample tracking across locations