Does it support DNA and protein sequence management?

Absolutely. It allows for creating, updating, and registering DNA, RNA, and AA sequences directly in the Benchling Registry with full schema field support.

Can this skill manage physical laboratory samples?

Yes, it provides full inventory management capabilities, including creating containers, moving boxes, and tracking sample transfers across locations.

Can I automate my lab notebook entries with this skill?

Yes, you can programmatically create notebook entries, apply templates, and link specific entities or results to your documentation for audit compliance.

How do I authenticate with Benchling using this skill?

The skill supports both API Key authentication (recommended for scripts) and OAuth Client Credentials (recommended for apps) using the Benchling Python SDK.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Zehong-Wang

byZehong-Wang

0•

データサイエンスとML

Automates Benchling life sciences R&D operations including registry management, inventory tracking, and electronic lab notebook (ELN) documentation.

This skill integrates Claude with the Benchling platform, enabling researchers and developers to programmatically manage biological data, physical inventory, and lab workflows. It provides comprehensive support for the Benchling Python SDK and REST API, facilitating the creation of DNA/RNA sequences, management of sample locations, and automation of notebook entries. By bridging the gap between AI-assisted coding and life sciences R&D, this skill helps bioinformaticians and lab automation engineers streamline data entry, automate sequence design, and synchronize Benchling data with external systems or the Benchling Data Warehouse.

主な機能

01Inventory tracking for containers, boxes, and storage locations.

020 GitHub stars

03Electronic Lab Notebook (ELN) entry and template automation.

04Registry management for DNA, RNA, and protein sequence entities.

05Workflow task management and status tracking for lab processes.

06Support for Benchling Data Warehouse SQL queries and AWS EventBridge integrations.

ユースケース

01Building event-driven lab automations that trigger actions based on workflow status changes.

02Synchronizing physical sample inventory and locations between external databases and Benchling.

03Automating bulk sequence imports from FASTA files into the Benchling Registry.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add zehong-wang/kosmos benchling-integration

For use in Claude.ai and ChatGPT

Download Skill