Can I use this skill to manage physical samples in a lab?

Yes, it includes full support for inventory management, allowing you to create, update, and transfer containers, boxes, and locations programmatically.

How does the skill handle large-scale data retrieval?

It utilizes generator-based pagination through the Benchling Python SDK to ensure memory-efficient processing of thousands of registry entities or containers.

Can this skill interact with the Benchling Data Warehouse?

Yes, it provides guidance for connecting to and querying the Data Warehouse via SQL for complex data analysis and reporting tasks.

What authentication methods does the Benchling skill support?

The skill supports API Key authentication for internal scripts and OAuth 2.0 Client Credentials for building production-grade Benchling Apps.

Does this skill work with DNA and protein sequences?

Absolutely. It provides specialized classes for creating and managing DNA, RNA, and AA sequences within the Benchling Registry, including support for circularity and custom fields.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Yezez9

byYezez9

0•

データサイエンスとML

Automates life sciences research workflows by integrating Benchling's registry, inventory, and electronic lab notebook via Python SDK and REST API.

Benchling R&D Integration empowers Claude to act as a bridge to the industry-leading cloud platform for life sciences. This skill enables the programmatic management of biological entities such as DNA, RNA, and protein sequences, while also providing robust tools for physical inventory tracking and electronic lab notebook (ELN) documentation. By leveraging the Benchling Python SDK, it allows researchers and developers to automate sample transfers, build custom Benchling Apps, and sync laboratory data with external systems. Whether you are performing bulk sequence imports or querying the Data Warehouse for analytics, this skill provides the patterns and best practices needed for sophisticated lab data management automation.

主な機能

010 GitHub stars

02Workflow task orchestration and asynchronous status tracking

03Comprehensive Registry management for biological sequences and custom entities

04Automated creation and linking of Electronic Lab Notebook (ELN) entries

05Physical inventory operations including container, box, and plate management

06Secure authentication via API Key and OAuth2 Client Credentials

ユースケース

01Triggering downstream computational analysis workflows when laboratory results are registered

02Syncing physical sample locations and container metadata between laboratory hardware and Benchling

03Automating the bulk import and registration of DNA sequences from FASTA files

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add yezez9/research-agent benchling-integration

For use in Claude.ai and ChatGPT

主な機能

010 GitHub stars

02Workflow task orchestration and asynchronous status tracking

03Comprehensive Registry management for biological sequences and custom entities

04Automated creation and linking of Electronic Lab Notebook (ELN) entries

05Physical inventory operations including container, box, and plate management

06Secure authentication via API Key and OAuth2 Client Credentials

ユースケース

01Triggering downstream computational analysis workflows when laboratory results are registered

02Syncing physical sample locations and container metadata between laboratory hardware and Benchling

03Automating the bulk import and registration of DNA sequences from FASTA files