Can BioServices help with identifier mapping?

Yes, one of its core strengths is mapping identifiers across different databases, such as converting UniProtKB IDs to Ensembl, RefSeq, or KEGG IDs.

Is it possible to extract protein interaction networks?

Yes, by utilizing services like PSICQUIC and KEGG, the skill can retrieve protein-protein interaction data and export them into formats like SIF for network analysis.

Does this skill support sequence analysis like BLAST?

Yes, BioServices provides tools to run NCBI BLAST searches, manage job status, and retrieve alignment results directly within your Python workflow.

Which biological databases can I access with this skill?

You can access major databases including UniProt for proteins, KEGG and Reactome for pathways, ChEMBL and PubChem for compounds, and QuickGO for gene ontology.

What is the BioServices skill for Claude?

BioServices is a Python-based skill that allows Claude to programmatically access over 40 bioinformatics web services and databases for biological data retrieval and analysis.

BioServices Bioinformatics

Name: BioServices Bioinformatics
Author: sanand0

bysanand0

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データサイエンスとML

Accesses and integrates data from over 40 bioinformatics web services and databases using a unified Python API.

BioServices is a comprehensive Python toolkit designed for researchers and bioinformaticians to programmatically interact with a vast array of biological data resources. It simplifies complex workflows by providing a single interface for UniProt, KEGG, ChEMBL, and many other databases, enabling seamless cross-database queries, identifier mapping, sequence analysis, and pathway discovery. This skill allows Claude to automate the retrieval of protein annotations, chemical compound data, and genomic information without requiring manual navigation of disparate REST or SOAP protocols.

主な機能

01Integrated sequence analysis tools for BLAST searches and sequence alignments

023 GitHub stars

03Programmatic access to 40+ biological databases including UniProt, KEGG, and ChEMBL

04Advanced metabolic pathway discovery and protein-protein interaction analysis

05Automated retrieval of protein annotations, 3D structures, and chemical properties

06Unified identifier mapping between disparate biological data sources and gene IDs

ユースケース

01Automating sequence similarity pipelines using NCBI BLAST and retrieving results programmatically

02Mapping protein identifiers from UniProt to KEGG pathways for functional enrichment analysis

03Conducting batch compound searches across multiple chemical databases for drug discovery workflows

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add sanand0/scientific-research bioservices

For use in Claude.ai and ChatGPT

Download Skill