Does this skill support sequence alignment tools?

Yes, it provides programmatic access to sequence analysis tools like NCBI BLAST and MUSCLE for sequence similarity and alignment tasks.

Can I use this skill to convert gene or protein IDs between different platforms?

Yes, BioServices excels at identifier mapping, allowing you to seamlessly convert IDs between platforms like KEGG, UniProt, Ensembl, RefSeq, and PDB.

How does this skill facilitate AI-assisted scientific research?

It enables Claude to query live scientific databases directly, allowing the AI to base its analysis on the most current biological data rather than static training data.

What biological databases are supported by the BioServices skill?

It supports over 40 major services, including UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO, and NCBI BLAST, providing a unified interface for all.

BioServices Bioinformatics Toolkit

Name: BioServices Bioinformatics Toolkit
Author: ricable

byricable

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データサイエンスとML

Provides programmatic access to over 40 bioinformatics web services and databases for biological data retrieval and cross-platform analysis.

概要

BioServices is a comprehensive Python integration for the Claude Code environment that simplifies access to major biological databases including UniProt, KEGG, and ChEMBL. It allows researchers and developers to perform complex multi-database workflows, such as mapping identifiers, analyzing metabolic pathways, and retrieving protein sequences, all through a unified API. This skill is essential for bioinformatics pipelines, automating data retrieval from REST and SOAP services, and integrating disparate biological resources into a single, cohesive workflow within AI-driven research environments.

主な機能

1 GitHub stars
Metabolic pathway discovery and protein interaction network extraction
Cross-database chemical search and compound property retrieval
Automated identifier mapping between disparate biological databases
Programmatic protein sequence retrieval and similarity searches using BLAST
Unified access to 40+ bioinformatics services including UniProt, KEGG, and PubChem

ユースケース

Conducting pathway-level analysis to understand gene interactions and metabolic processes
Automating the retrieval of protein annotations and sequences for large-scale genomic studies
Mapping identifiers across various biological databases to consolidate research datasets

概要

主な機能

1 GitHub stars
Metabolic pathway discovery and protein interaction network extraction
Cross-database chemical search and compound property retrieval
Automated identifier mapping between disparate biological databases
Programmatic protein sequence retrieval and similarity searches using BLAST
Unified access to 40+ bioinformatics services including UniProt, KEGG, and PubChem

ユースケース

Conducting pathway-level analysis to understand gene interactions and metabolic processes
Automating the retrieval of protein annotations and sequences for large-scale genomic studies
Mapping identifiers across various biological databases to consolidate research datasets