What is the DNAnexus Integration skill?

It is a specialized capability for Claude Code designed to help developers build, deploy, and manage genomics applications and data on the DNAnexus cloud platform.

Does it support workflow orchestration?

Absolutely, it includes detailed guidance on chaining jobs, creating subjobs for parallel processing, and managing complex analysis dependencies across the platform.

How do I handle app configuration and dependencies?

The skill provides comprehensive documentation for writing dxapp.json files, managing system packages via execDepends, and integrating Docker containers for complex environments.

How does it help with the dxpy Python SDK?

The skill provides specific code patterns and best practices for using dxpy to upload data, run jobs, search for objects, and interact with the DNAnexus API programmatically.

Can I use this for bioinformatics pipeline development?

Yes, it is specifically optimized to help process common genomics file types like FASTQ, BAM, and VCF, and to configure the necessary dependencies for analysis tools.

DNAnexus Integration

Name: DNAnexus Integration
Author: Microck

byMicrock

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114

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データサイエンスとML

Simplifies the development, deployment, and management of cloud-based genomics pipelines on the DNAnexus platform.

This skill provides comprehensive guidance for bioinformaticians and developers working with the DNAnexus platform, enabling them to build robust apps, manage large-scale genomic data, and automate complex analysis workflows. It offers deep expertise in the dxpy Python SDK, app configuration via dxapp.json, and the orchestration of distributed jobs to process sequencing data like FASTQ and BAM files efficiently in a cloud environment. Whether you are creating a new analysis tool or managing vast data repositories, this skill ensures best practices for resource management and platform integration.

主な機能

01Full-lifecycle DNAnexus app and applet development

02Advanced job orchestration and workflow monitoring

03Comprehensive dxapp.json configuration and dependency management

04114 GitHub stars

05Automated data management and project organization with dxpy

06Bioinformatics pipeline optimization for FASTQ, BAM, and VCF data

ユースケース

01Building and deploying custom bioinformatics analysis pipelines

02Orchestrating multi-step secondary analysis workflows with parallel job execution

03Automating large-scale genomic data uploads and cloud storage organization

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills dnanexus-integration

For use in Claude.ai and ChatGPT

Download Skill