European Nucleotide Archive (ENA) Access

概要

This skill empowers Claude to interact programmatically with the European Nucleotide Archive (ENA), a leading global repository for nucleotide sequence data. It allows for the retrieval of DNA and RNA sequences, raw sequencing reads (FASTQ), and genome assemblies via REST APIs or FTP. Whether you are performing taxonomic lookups, searching for specific studies, or automating the ingestion of datasets into bioinformatics pipelines, this skill provides the structure and guidance needed to handle high-volume genomic data and metadata efficiently.

主な機能

• Support for multiple data formats including FASTQ, FASTA, XML, and JSON
• Advanced search capabilities for studies, samples, experiments, and runs
• 0 GitHub stars
• Guidance on high-speed data transfer via FTP and Aspera for bulk datasets
• Programmatic access to ENA Portal and Browser APIs for metadata and record retrieval
• Taxonomy integration for querying organism lineage and rank

ユースケース

• Integrating public genomic data into automated bioinformatics analysis pipelines
• Automating the retrieval of raw sequencing reads (FASTQ) for specific study accessions
• Filtering and searching for genome assemblies based on taxonomic criteria