Is this skill suitable for clinical research?

Absolutely. It includes detailed information on clinical significance, concentration ranges in biological fluids (like serum and urine), and disease-associated biomarkers.

Is the HMDB data free for commercial use?

HMDB is a freely available public resource for academic use, but redistribution or commercial use requires explicit permission from the original authors.

What data can I access with the HMDB Database skill?

You can access over 220,000 metabolite entries, including chemical structures, clinical biomarkers, NMR/MS spectra, and metabolic pathways.

Does this skill support structure-based searches?

Yes, it provides guidance for searching metabolites using SMILES, InChI strings, and molecular weight through HMDB's ChemQuery system.

How does this skill handle bulk scientific data?

It provides established best practices for downloading and parsing HMDB datasets in XML, SDF, and CSV formats for large-scale programmatic analysis.

HMDB Scientific Database

Name: HMDB Scientific Database
Author: Yezez9

byYezez9

0•

データサイエンスとML

Provides comprehensive access to the Human Metabolome Database for metabolomics research, metabolite identification, and clinical biomarker discovery.

The HMDB Database skill empowers Claude to interact with the world's most comprehensive resource for human small molecule metabolites. It enables detailed searches across over 220,000 metabolite entries, allowing users to retrieve chemical properties, spectral data, and clinical associations. Whether you're performing untargeted metabolomics, investigating metabolic pathways, or identifying disease biomarkers, this skill provides the domain-specific logic and data access patterns needed to integrate high-quality metabolomic information directly into scientific research workflows.

主な機能

01Mapping of metabolites to biological pathways and enzymatic reactions

020 GitHub stars

03Access to 220,000+ metabolite entries and 8,600+ protein sequences

04Structure-based search support using SMILES and InChI strings

05Retrieval of clinical biomarker data and biological concentration ranges

06Integration with NMR, MS, and MS-MS spectroscopic data for identification

ユースケース

01Identifying unknown metabolites in untargeted metabolomics studies using spectral matching

02Investigating disease-specific biomarkers and their clinical significance in human specimens

03Mapping experimental metabolite lists to biological pathways for mechanistic interpretation

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add yezez9/research-agent hmdb-database

For use in Claude.ai and ChatGPT

主な機能

01Mapping of metabolites to biological pathways and enzymatic reactions

020 GitHub stars

03Access to 220,000+ metabolite entries and 8,600+ protein sequences

04Structure-based search support using SMILES and InChI strings

05Retrieval of clinical biomarker data and biological concentration ranges

06Integration with NMR, MS, and MS-MS spectroscopic data for identification

ユースケース

01Identifying unknown metabolites in untargeted metabolomics studies using spectral matching

02Investigating disease-specific biomarkers and their clinical significance in human specimens

03Mapping experimental metabolite lists to biological pathways for mechanistic interpretation