Automates IGV snapshot generation for visualizing genomic alignments and variant calls in BAM files.
The IGV Integration skill streamlines genomic data visualization by automating the generation of high-quality PNG screenshots through the Integrative Genomics Viewer (IGV). It enables bioinformaticians and researchers to batch-process multiple genomic regions defined in BED files, overlay multiple BAM tracks for comparative analysis, and manage IGV's batch command interface directly through Claude. This tool is specifically designed to accelerate WGS/WES quality control and variant validation workflows by replacing manual GUI interactions with reproducible automated scripts.
主な機能
01Automated PNG snapshot generation for specific genomic loci
020 GitHub stars
03Reproducible batch script generation for debugging and workflow documentation
04Batch processing of multiple regions via BED file integration
05Simultaneous multi-track BAM visualization for sample comparison
06Customizable IGV parameters including panel height and Java heap size
ユースケース
01Generating batch snapshots for high-throughput genomic quality control
02Visualizing and validating variant calls across multiple patient samples
03Inspecting BLAT alignment results and structural variant hit regions
