Can I backup notebooks including their attachments?

Absolutely. The skill provides scripts to download complete notebook data as 7z archives, with options to include or exclude file attachments.

What credentials do I need to use this integration?

You require an Enterprise LabArchives license with API access enabled, an API access key ID and password from your administrator, and your user authentication credentials.

Is it possible to automate data uploads from Jupyter?

Yes, the skill provides specific workflows and Python wrappers to export Jupyter notebook content and upload it as a new entry in LabArchives automatically.

Does this skill support regional LabArchives endpoints?

Yes, it includes configuration support for US/International, UK, and Australian regional API endpoints to ensure data compliance and performance.

LabArchives Integration

Name: LabArchives Integration
Author: lifangda

bylifangda

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生産性とワークフロー

Automates electronic lab notebook management through the LabArchives REST API for programmatic research documentation and data backup.

概要

The LabArchives Integration skill enables researchers and developers to programmatically manage Electronic Lab Notebooks (ELN) using the LabArchives REST API. It streamlines complex scientific workflows such as batch backing up notebooks, uploading experimental data, managing user permissions, and generating institutional usage reports. By providing standardized scripts and Python wrappers, it facilitates seamless synchronization between scientific tools like Jupyter or REDCap and the LabArchives platform, ensuring secure, compliant, and automated research data management for laboratory environments.

主な機能

Automated entry creation and file upload management
Regional API endpoint configuration for US, UK, and Australia
Institutional usage and compliance report generation
Integration support for Jupyter, REDCap, and Protocols.io
Programmatic notebook backup and attachment retrieval
16 GitHub stars

ユースケース

Synchronizing computational results from Jupyter Notebooks directly into LabArchives for audit trails
Automating the upload of experimental results and data files from lab equipment to electronic notebooks
Implementing scheduled, programmatic backups of institutional research data for long-term archiving

概要

主な機能

Automated entry creation and file upload management
Regional API endpoint configuration for US, UK, and Australia
Institutional usage and compliance report generation
Integration support for Jupyter, REDCap, and Protocols.io
Programmatic notebook backup and attachment retrieval
16 GitHub stars

ユースケース

Synchronizing computational results from Jupyter Notebooks directly into LabArchives for audit trails
Automating the upload of experimental results and data files from lab equipment to electronic notebooks
Implementing scheduled, programmatic backups of institutional research data for long-term archiving