Can I search for human proteins specifically?

Yes, you can use specific taxonomy filters such as 'taxonomy_id:9606' or 'organism_name:human' within your search queries.

What is the difference between Swiss-Prot and TrEMBL data?

Swiss-Prot entries are manually curated and reviewed by experts, while TrEMBL entries are computationally analyzed and unreviewed.

Does this skill require external Python libraries?

The skill includes a native Python client for direct REST API access, though it can be used alongside libraries like 'bioservices' for advanced workflows.

What formats does the UniProt skill support?

It supports a wide variety of formats including JSON, FASTA, TSV, Excel, XML, RDF, and TXT for flexible protein data retrieval.

How many IDs can I map at once using this skill?

The UniProt ID mapping service integrated into this skill supports batch jobs of up to 100,000 identifiers per request.

UniProt Protein Database

Name: UniProt Protein Database
Author: K-Dense-AI

byK-Dense-AI

•

2,188

データサイエンスとML

Accesses the UniProt REST API to search, retrieve, and map protein sequence and functional data directly within scientific workflows.

概要

The UniProt Database skill provides Claude with direct access to the world’s most comprehensive resource for protein information, enabling specialized bioinformatics and life science operations. It allows users to perform complex searches by gene name, accession number, or organism, retrieve sequences in FASTA format, and map identifiers across various biological databases like Ensembl, RefSeq, and PDB. By integrating Swiss-Prot and TrEMBL annotations, this skill facilitates deep biological data analysis, sequence retrieval, and automated metadata collection for researchers and developers.

主な機能

Access to curated Swiss-Prot and unreviewed TrEMBL annotations
Comprehensive protein search by gene, name, accession, or taxonomy
FASTA and multi-format sequence retrieval for protein analysis
Streaming and batch retrieval capabilities for large-scale datasets
Automated ID mapping between UniProt and external databases like PDB or RefSeq
2,188 GitHub stars

ユースケース

Automating the collection of Gene Ontology (GO) terms and domain features for specific proteins
Mapping gene identifiers to protein accessions across different biological databases
Retrieving protein sequences and functional annotations for bioinformatics pipelines

概要

主な機能

Access to curated Swiss-Prot and unreviewed TrEMBL annotations
Comprehensive protein search by gene, name, accession, or taxonomy
FASTA and multi-format sequence retrieval for protein analysis
Streaming and batch retrieval capabilities for large-scale datasets
Automated ID mapping between UniProt and external databases like PDB or RefSeq
2,188 GitHub stars

ユースケース

Automating the collection of Gene Ontology (GO) terms and domain features for specific proteins
Mapping gene identifiers to protein accessions across different biological databases
Retrieving protein sequences and functional annotations for bioinformatics pipelines