Does it support Benchling's asynchronous operations?

Yes, it includes helper patterns for managing Benchling's long-running asynchronous tasks, including polling logic and wait-for-task completion helpers.

How does this skill handle Benchling authentication?

It supports both API Key authentication for scripts and OAuth Client Credentials for production applications, with built-in guidance on secure credential management using environment variables.

Is it compatible with the Benchling Data Warehouse?

Absolutely, it provides guidance for connecting to the Data Warehouse using SQL to generate compliance reports and aggregate experimental results.

Can I use this for bulk data imports?

Yes, the skill provides standardized patterns for bulk entity creation, such as importing sequences from external files or managing large-scale inventory audits.

Does the skill handle API rate limiting and retries?

Yes, the implementation patterns include a recommended retry strategy with exponential backoff for common status codes like 429 (Too Many Requests) and 503 (Service Unavailable).

Benchling Integration

Name: Benchling Integration
Author: Microck

byMicrock

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데이터 과학 및 ML

Automates life sciences R&D workflows by integrating with the Benchling platform for inventory management, registry entities, and electronic lab notebooks.

소개

This skill provides a comprehensive toolkit for developers and scientists to programmatically interact with Benchling using its Python SDK and REST API. It streamlines complex laboratory operations such as managing biological sequences, automating inventory transfers, and creating electronic lab notebook (ELN) entries. Whether you are building event-driven Benchling Apps via AWS EventBridge or querying the Data Warehouse for scientific analytics, this skill ensures best practices in authentication, pagination, and error handling for robust biotech automation and reproducible research.

주요 기능

Registry management for DNA, RNA, and protein sequences
Electronic Lab Notebook (ELN) entry creation and documentation
Workflow task management and status automation
Laboratory inventory automation for samples, containers, and plates
Data Warehouse querying and AWS EventBridge integration
89 GitHub stars

사용 사례

Bulk importing DNA sequences from FASTA files into the Benchling Registry
Automating sample transfers and location updates within lab inventory systems
Syncing experimental results between Benchling and external analytics platforms

소개

주요 기능

Registry management for DNA, RNA, and protein sequences
Electronic Lab Notebook (ELN) entry creation and documentation
Workflow task management and status automation
Laboratory inventory automation for samples, containers, and plates
Data Warehouse querying and AWS EventBridge integration
89 GitHub stars

사용 사례

Bulk importing DNA sequences from FASTA files into the Benchling Registry
Automating sample transfers and location updates within lab inventory systems
Syncing experimental results between Benchling and external analytics platforms