Can I manage physical inventory like freezers and plates?

Absolutely. The skill supports full inventory management, including creating containers, boxes, and managing transfers between storage locations.

Can I use this for event-driven automation?

Yes, it includes patterns for setting up integrations with AWS EventBridge to respond to real-time changes in Benchling, such as entity creation or status changes.

Does this skill require a Benchling account?

Yes, you need an active Benchling tenant and either an API key or OAuth credentials to interact with the platform through this skill.

Is it secure to use my API keys with this skill?

The skill follows security best practices by recommending the use of environment variables or secure credential managers rather than hardcoding keys in your scripts.

How does this handle sequence data?

It uses the Benchling Python SDK to create, update, and register DNA, RNA, and amino acid sequences with support for custom schema fields and metadata.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Activer007

byActiver007

데이터 과학 및 ML

Connects Claude to the Benchling life sciences platform to automate R&D data management, registry updates, and laboratory workflows.

소개

This skill provides comprehensive integration with the Benchling cloud platform, allowing researchers and bioinformaticians to programmatically manage biological sequences, inventory, and electronic lab notebook (ELN) entries. It leverages the Benchling Python SDK and REST API to automate repetitive lab operations, sync data between external systems, and build event-driven laboratory workflows. Whether you are managing complex DNA registries or querying the Benchling Data Warehouse for analytics, this skill streamlines the interaction between AI-assisted coding and life sciences R&D data.

주요 기능

0 GitHub stars
Workflow task automation and status tracking for laboratory processes
Full Registry management for DNA, RNA, and protein sequences
Electronic Lab Notebook (ELN) entry creation and documentation management
Data Warehouse access for SQL-based analytics and reporting
Laboratory inventory automation for samples, containers, and storage locations

사용 사례

Syncing experimental results between Benchling and external bioinformatic analysis pipelines
Bulk importing and registering biological sequences from FASTA or other external files
Automating sample transfers and inventory audits within the laboratory

소개

주요 기능

0 GitHub stars
Workflow task automation and status tracking for laboratory processes
Full Registry management for DNA, RNA, and protein sequences
Electronic Lab Notebook (ELN) entry creation and documentation management
Data Warehouse access for SQL-based analytics and reporting
Laboratory inventory automation for samples, containers, and storage locations

사용 사례

Syncing experimental results between Benchling and external bioinformatic analysis pipelines
Bulk importing and registering biological sequences from FASTA or other external files
Automating sample transfers and inventory audits within the laboratory