How do I authenticate with Benchling using this skill?

You can authenticate using either an API Key for simple automation scripts or OAuth Client Credentials for building secure, multi-user Benchling Apps.

Does this skill support biological sequence management?

Yes, it provides typed classes for creating, updating, and managing DNA, RNA, and AA sequences directly within the Benchling Registry.

Can I query the Benchling Data Warehouse?

Yes, the skill provides guidance on using SQL to access historical data and experimental results for advanced analytics and reporting.

Can I automate inventory transfers with this skill?

Absolutely. The skill includes methods for creating, moving, and updating containers, boxes, and locations within the Benchling inventory system.

Is it possible to trigger actions based on Benchling events?

Yes, the skill covers patterns for using AWS EventBridge to build event-driven integrations that react to changes like entity creation or workflow status updates.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Microck

byMicrock

•

데이터 과학 및 ML

Automates life sciences research workflows by integrating Benchling's registry, inventory, and electronic lab notebook via Python SDK and API.

소개

This skill provides a comprehensive toolkit for developers and scientists to programmatically interact with the Benchling cloud platform. It enables the management of biological sequences, inventory items, and lab notebook entries while facilitating the automation of complex R&D workflows. By leveraging the Benchling Python SDK and REST API, users can synchronize data between Benchling and external systems, build custom Benchling Apps, and query the Data Warehouse for advanced analytics, making it essential for laboratory data management and process automation.

주요 기능

Integration with AWS EventBridge for event-driven laboratory triggers
Electronic Lab Notebook (ELN) entry creation and template management
Programmatic management of DNA, RNA, and protein registry entities
Automated inventory operations for samples, containers, and plate locations
Workflow automation with task status tracking and asynchronous execution
89 GitHub stars

사용 사례

Bulk importing biological sequences from FASTA files into the Benchling Registry
Building automated Benchling Apps to handle complex, repetitive R&D tasks
Synchronizing laboratory inventory data with external LIMS or databases

소개

주요 기능

Integration with AWS EventBridge for event-driven laboratory triggers
Electronic Lab Notebook (ELN) entry creation and template management
Programmatic management of DNA, RNA, and protein registry entities
Automated inventory operations for samples, containers, and plate locations
Workflow automation with task status tracking and asynchronous execution
89 GitHub stars

사용 사례

Bulk importing biological sequences from FASTA files into the Benchling Registry
Building automated Benchling Apps to handle complex, repetitive R&D tasks
Synchronizing laboratory inventory data with external LIMS or databases