Biopython Bioinformatics Toolkit

소개

The Biopython skill provides a comprehensive environment for biological computation, enabling researchers and developers to perform complex bioinformatics tasks directly within Claude Code. It offers specialized guidance for sequence manipulation, parsing standard biological file formats (FASTA, GenBank, PDB), and programmatic access to NCBI databases via Entrez. Whether you are conducting phylogenetic analysis, automating BLAST workflows, or performing structural protein analysis, this skill implements domain-specific best practices and memory-efficient patterns for scientific computing.

주요 기능

• Comprehensive sequence manipulation and translation via Bio.Seq
• Programmatic NCBI Entrez access for automated database queries
• Phylogenetic tree construction, manipulation, and visualization
• 0 GitHub stars
• High-performance biological file I/O for FASTA, GenBank, and FASTQ
• Structural bioinformatics tools for parsing and analyzing PDB files

사용 사례

• Automating the retrieval, parsing, and translation of genomic sequences from GenBank
• Analyzing protein structures and calculating molecular distances from PDB data
• Building and visualizing phylogenetic trees from multiple sequence alignments