How does BioServices handle different API protocols?

BioServices transparently handles both REST and SOAP/WSDL protocols, providing a unified Pythonic interface regardless of the underlying service architecture.

Which databases does the BioServices skill support?

BioServices supports over 40 major bioinformatics services including UniProt, KEGG, ChEMBL, PubChem, QuickGO, Reactome, and PDB.

Can I use this skill to convert gene or protein IDs?

Yes, it provides specialized tools for identifier mapping between databases such as UniProtKB, KEGG, Ensembl, PDB, and RefSeq.

Does this skill handle sequence alignments?

Yes, it provides programmatic access to NCBI BLAST and other alignment tools for running sequence similarity searches and retrieving results.

BioServices Bioinformatics Integration

Name: BioServices Bioinformatics Integration
Author: Activer007

byActiver007

데이터 과학 및 ML

Accesses and integrates over 40 bioinformatics web services and databases including UniProt, KEGG, and ChEMBL through a unified Python interface.

소개

BioServices is a comprehensive Claude Code skill designed for life sciences workflows, enabling seamless programmatic access to major biological databases. It simplifies complex tasks like mapping identifiers across UniProt and KEGG, performing BLAST sequence searches, and extracting metabolic pathway data. By wrapping diverse REST and SOAP protocols into a standard API, it allows researchers and developers to build integrated bioinformatics pipelines for protein analysis, chemical informatics, and genomic data mining directly within their coding environment.

주요 기능

Cross-database identifier mapping and batch conversion utilities
Unified API for 40+ bioinformatics databases including UniProt and KEGG
0 GitHub stars
Metabolic pathway extraction and protein interaction network analysis
Automated BLAST sequence searches and similarity analysis
Chemical compound searching across ChEBI, ChEMBL, and PubChem

사용 사례

Automating the retrieval and characterization of protein sequences and functional annotations
Mapping heterogeneous biological identifiers for large-scale multi-omics data integration
Extracting and exporting protein-protein interaction networks from metabolic pathways

소개

주요 기능

Cross-database identifier mapping and batch conversion utilities
Unified API for 40+ bioinformatics databases including UniProt and KEGG
0 GitHub stars
Metabolic pathway extraction and protein interaction network analysis
Automated BLAST sequence searches and similarity analysis
Chemical compound searching across ChEBI, ChEMBL, and PubChem

사용 사례

Automating the retrieval and characterization of protein sequences and functional annotations
Mapping heterogeneous biological identifiers for large-scale multi-omics data integration
Extracting and exporting protein-protein interaction networks from metabolic pathways