Which biological databases are supported?

It supports over 40 services, including major repositories like UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO, and NCBI BLAST.

How does it handle different bioinformatics data formats?

The skill facilitates the parsing of various formats including XML, JSON, TSV, and FASTA, often integrating seamlessly with tools like Pandas and BioPython.

What is the BioServices Claude Code Skill?

It is a specialized capability that allows Claude to programmatically interact with dozens of bioinformatics databases and web services using the BioServices Python library.

Can this skill help with identifier mapping?

Yes, it is highly effective at converting biological identifiers between databases, such as mapping UniProt accessions to KEGG, Ensembl, or PDB IDs.

Does it support sequence analysis tasks?

Absolutely. It can trigger asynchronous BLAST searches, perform sequence alignments, and retrieve FASTA sequences for further analysis.

BioServices Bioinformatics Toolkit

Name: BioServices Bioinformatics Toolkit
Author: Microck

byMicrock

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데이터 과학 및 ML

Provides programmatic Python access to over 40 bioinformatics web services and databases for integrated biological data analysis.

BioServices is a comprehensive Python package designed to streamline workflows across multiple biological databases including UniProt, KEGG, ChEMBL, and PubChem. It enables researchers and developers to perform complex tasks such as protein sequence retrieval, metabolic pathway analysis, chemical compound searching, and cross-database identifier mapping through a unified API. By abstracting complex REST and SOAP protocols, it serves as a powerful bridge for integrating diverse bioinformatics resources into automated data science and discovery pipelines within the Claude Code environment.

주요 기능

01Metabolic pathway discovery and network extraction

02Integrated BLAST and sequence similarity search tools

03Protein sequence retrieval and functional annotation

0489 GitHub stars

05Unified API for 40+ bioinformatics services

06Cross-database identifier mapping (e.g., KEGG to UniProt)

사용 사례

01Building integrated drug-discovery pipelines by cross-referencing chemical compounds with biological pathways

02Mapping biological identifiers across diverse genomic and proteomic databases for data normalization

03Automated retrieval of protein structures and annotations for large-scale batch analysis

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills bioservices

For use in Claude.ai and ChatGPT

Download Skill