Is this skill suitable for commercial research?

No, the KEGG API is strictly provided for academic use only. Commercial organizations must obtain a license directly from KEGG.

Which organisms can I query with this skill?

The skill supports all organisms available in KEGG, including human (hsa), mouse (mmu), yeast (sce), and E. coli (eco), among thousands of others.

What external databases are supported for ID conversion?

You can convert identifiers between KEGG and major databases including NCBI Gene, NCBI Protein, UniProt, PubChem, and ChEBI.

Can I download pathway diagrams as images?

Yes, the skill supports retrieving pathway maps in PNG format using the 'image' format option in the kegg_get operation.

KEGG Database Analysis

Name: KEGG Database Analysis
Author: ricable

byricable

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데이터 과학 및 ML

Integrates KEGG REST API access into workflows for biological pathway analysis, gene mapping, and molecular interaction research.

소개

The KEGG Database skill provides Claude with direct access to the Kyoto Encyclopedia of Genes and Genomes, a premier resource for understanding high-level functions of biological systems. It enables researchers to perform complex bioinformatics tasks such as gene-to-pathway mapping, metabolic pathway visualization, and drug-drug interaction analysis. By providing Python-based helpers for ID conversion across major databases like NCBI and UniProt, this skill streamlines the integration of KEGG data into broader computational biology and genomic research workflows.

주요 기능

1 GitHub stars
Support for metabolic, genomic, and disease pathway analysis
Chemical structure and pathway image extraction
Cross-database ID conversion for NCBI, UniProt, and PubChem
Direct REST API access to KEGG pathways, genes, and compounds
Sequence retrieval in FASTA format (amino acid and nucleotide)

사용 사례

Identifying metabolic reactions and compounds associated with specific enzymes or organisms
Mapping differentially expressed gene lists to biological pathways for enrichment analysis
Integrating KEGG pathway data with external bioinformatics databases for unified data pipelines

소개

주요 기능

1 GitHub stars
Support for metabolic, genomic, and disease pathway analysis
Chemical structure and pathway image extraction
Cross-database ID conversion for NCBI, UniProt, and PubChem
Direct REST API access to KEGG pathways, genes, and compounds
Sequence retrieval in FASTA format (amino acid and nucleotide)

사용 사례

Identifying metabolic reactions and compounds associated with specific enzymes or organisms
Mapping differentially expressed gene lists to biological pathways for enrichment analysis
Integrating KEGG pathway data with external bioinformatics databases for unified data pipelines