Builds, deploys, and manages serverless bioinformatics workflows using the Latch SDK and cloud infrastructure.
This skill empowers bioinformaticians and developers to design and scale production-grade pipelines on the Latch platform. It provides specialized guidance on using Python decorators like @workflow and @task, managing cloud data via LatchFile and LatchDir, and integrating existing Nextflow or Snakemake pipelines. Whether you are configuring high-performance GPU tasks for protein folding or organizing genomic data in the Latch Registry, this skill streamlines the transition from local development to serverless cloud execution with built-in best practices for cost optimization and reproducibility.
주요 기능
01Cloud data management using LatchFile and LatchDir
02Serverless workflow deployment with Python decorators
03Structured data organization with Latch Registry integration
040 GitHub stars
05Nextflow and Snakemake pipeline integration
06Custom resource configuration for CPU and GPU (A100/V100) tasks
사용 사례
01Migrating existing Nextflow or Snakemake workflows to serverless cloud environments
02Configuring GPU-accelerated tasks for AlphaFold or other compute-intensive models
03Developing and registering an RNA-seq analysis pipeline from scratch
