Accesses and retrieves 3D structural data for proteins and nucleic acids from the RCSB Protein Data Bank.
This skill integrates the RCSB Protein Data Bank (PDB) into Claude Code, enabling researchers and developers to programmatically search, retrieve, and analyze over 200,000 biological macromolecular structures. It facilitates advanced queries by text, sequence similarity, and 3D geometry, allows for bulk downloading of coordinate files in PDB or mmCIF formats, and provides access to detailed experimental metadata. This tool is essential for streamlining workflows in structural biology, drug discovery, and protein engineering by bringing structural data directly into the development environment.
주요 기능
01Direct download of coordinates in PDB, mmCIF, and BinaryCIF formats
02Batch processing support for large-scale structural analysis
03Comprehensive text and attribute-based search for PDB entries
041 GitHub stars
05GraphQL-powered flexible metadata retrieval for experimental details
06Advanced sequence and structural similarity search capabilities
사용 사례
01Automating the retrieval of high-resolution structures for protein engineering
02Identifying protein targets and ligand binding sites for drug discovery
03Integrating PDB metadata into computational biology and ML training pipelines
