Can I use this skill to map IDs between different databases?

Yes, the skill supports mapping between UniProtKB and external databases like Ensembl, RefSeq, PDB, and AlphaFoldDB for up to 100,000 IDs per job.

How do I handle very large protein datasets with this skill?

The skill includes patterns for using the UniProt stream endpoint, which allows you to download complete result sets that exceed standard pagination limits.

What file formats are supported for protein data retrieval?

You can retrieve protein data in various formats including FASTA, JSON, TSV, Excel, XML, RDF, and TXT.

Does this skill provide access to manually curated protein data?

Yes, it allows you to filter specifically for Swiss-Prot (reviewed) entries versus TrEMBL (unreviewed) entries using the 'reviewed:true' query parameter.

UniProt Protein Database Access

Name: UniProt Protein Database Access
Author: BbgnsurfTech

byBbgnsurfTech

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데이터 과학 및 ML

Accesses the UniProt REST API to perform comprehensive protein searches, sequence retrieval, and cross-database identifier mapping.

The UniProt Database skill empowers Claude to interact directly with the world's leading resource for protein sequence and functional information. It enables users to search for proteins by name, gene, or accession, retrieve sequences in FASTA format, and map identifiers between UniProt and other major databases like Ensembl, RefSeq, or PDB. Whether you need to batch-retrieve protein annotations or stream large datasets for bioinformatics workflows, this skill provides the implementation patterns and API guidance to integrate high-quality protein data seamlessly into Python-based scientific applications.

주요 기능

01Direct retrieval of protein sequences in FASTA, JSON, and TSV formats

02Seamless identifier mapping between UniProt, Ensembl, PDB, and more

038 GitHub stars

04Advanced protein search using gene names, organisms, or taxonomies

05Detailed functional annotation access including GO terms and domains

06High-efficiency batch retrieval and streaming for large protein datasets

사용 사례

01Automating protein sequence collection for bioinformatics pipelines

02Mapping genomic identifiers to protein accessions for data integration

03Extracting functional annotations for large-scale proteomics analysis

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add bbgnsurftech/claude-skills-collection uniprot-database

For use in Claude.ai and ChatGPT

Download Skill