Provides access to the Protein Data Bank (PDB), offering information about 3D structures of biomolecules.
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The Augmented Nature PDB server is a Model Context Protocol (MCP) server that grants access to the Protein Data Bank (PDB), the global repository for 3D structural data of proteins, nucleic acids, and complex assemblies. It allows users to search, retrieve information, and download structure coordinates in various formats. The server integrates with RCSB PDB APIs and provides access to structure quality metrics and validation data, facilitating research in bioinformatics, drug discovery, and structural biology.
Key Features
01Download structure coordinates in multiple formats (PDB, mmCIF, mmTF, XML)
02Find PDB structures associated with a UniProt accession
03Retrieve detailed information for specific PDB structures
04Search for protein structures by keyword, protein name, or PDB ID
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06Obtain structure quality metrics and validation data
Use Cases
01Searching for insulin protein structures
02Finding PDB structures associated with a UniProt protein, such as P01308
03Downloading the PDB file for a specific structure, such as 1ABC
