Augmented Nature PubChem
Provides a comprehensive Model Context Protocol (MCP) server for accessing the PubChem chemical database.
About
Augmented Nature PubChem offers a comprehensive MCP server solution for accessing the PubChem database, providing access to over 110 million chemical compounds, extensive molecular properties, bioassay data, and chemical informatics tools. The server offers capabilities for chemical search and retrieval, structure analysis, property prediction, bioactivity data analysis, and safety assessment, enhanced by resource templates for URI-based data access. It integrates with other chemical and biological databases, enabling comprehensive chemical informatics pipelines and cross-database workflows.
Key Features
- Includes resource templates for URI-based data access.
- 2 GitHub stars
- Offers chemical search and retrieval, structure analysis, chemical properties, bioassay data, and safety information access.
- Allows batch compound lookup for bulk processing.
- Provides 29 tools for chemical informatics.
- Supports integration with other chemical/biological databases.
Use Cases
- Target Discovery: Find protein targets and identify small molecule ligands.
- Chemical similarity analysis: find similar compounds, compare molecular properties, and analyze structural features.
- Drug discovery workflow: search for compounds, analyze drug-likeness, check safety profiles, and find bioactivity data.
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