Biomart
Interfaces with Biomart databases using the Model Context Protocol (MCP) to provide biological data to Large Language Models.
About
Biomart is an MCP server designed to provide Large Language Models with access to biological data from Biomart databases. Leveraging the Model Context Protocol, Biomart allows LLMs like Claude to discover and interact with Biomart datasets. It facilitates tasks such as mart and dataset discovery, attribute and filter exploration, data retrieval, and ID translation. This enables users to query Biomart directly from their LLMs, enhancing the model's understanding of biological contexts and enabling more informed responses.
Key Features
- List available marts and datasets to explore the Biomart database structure
- View common or all available attributes and filters for specific datasets
- Query Biomart with specific attributes and filters to get biological data
- Convert between different biological identifiers (e.g., gene symbols to Ensembl IDs)
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Use Cases
- Enhance LLM responses with biological context
- Translate between different biological identifiers
- Retrieve specific biological data based on attributes and filters
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