BioMCP
Facilitates biomedical research by providing an open-source toolkit for AI assistants and agents to search and retrieve data on clinical trials, PubMed articles, and genomic variants.
About
BioMCP is an open-source toolkit designed to empower AI assistants and agents in the biomedical research domain. Built on the Model Context Protocol (MCP), it streamlines the process of accessing and integrating critical information from sources like PubMed, ClinicalTrials.gov, and MyVariant.info. BioMCP enables researchers to efficiently search and retrieve articles, clinical trial data, and genomic variant annotations, fostering data-driven discoveries.
Key Features
- Variant search and annotation using MyVariant.info (CIViC, ClinVar, COSMIC, dbSNP, etc.)
- 33 GitHub stars
- Searches and retrieves articles from PubTator3 (PubMed/PMC)
- Command-line interface for direct interaction with biomedical databases
- Advanced search for clinical trials on ClinicalTrials.gov
- Integration with Claude Desktop via MCP Server configuration
Use Cases
- Identifying relevant clinical trials for patients based on genomic profiles
- Providing context for AI agents in the biomedical research field
- Assisting researchers in literature reviews and data gathering
Sponsored