Oh My KEGG

About

Oh My KEGG is an unofficial Model Context Protocol (MCP) server designed to facilitate access to the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. It offers a rich set of over 30 specialized tools for searching and analyzing diverse biological data, including pathways, genes, compounds, reactions, enzymes, diseases, and drugs. Built with Streamable HTTP Transport, it ensures robust communication suitable for web environments and integrates seamlessly with LangChain Agents, enabling large language models (LLMs) to effectively leverage complex KEGG data. Additionally, it supports local LLM models through Ollama, making it a flexible solution for various bioinformatics and AI-driven research applications.

Key Features

• Ollama support for utilizing local large language models
• Access to over 30 specialized tools for comprehensive KEGG data (pathways, genes, compounds, etc.)
• Provides an unofficial Model Context Protocol (MCP) server for KEGG database access
• Streamable HTTP transport for efficient and scalable web-based communication
• Seamless integration with LangChain Agents for LLM-driven data queries
• 6 GitHub stars

Use Cases

• Empowering LLM agents with real-time access to the KEGG biological database
• Automating the retrieval and analysis of KEGG data for bioinformatics research
• Developing applications that require programmatic access to KEGG information via a standardized protocol