About
PyMOL-MCP integrates PyMOL with Claude AI, leveraging the Model Context Protocol (MCP) for a powerful combination that enables conversational structural biology, molecular visualization, and analysis through natural language. This integration facilitates two-way communication, allowing Claude AI to directly interact with and control PyMOL for tasks like manipulating molecular representations, performing structural analyses, and even executing Python code within PyMOL, all through natural language commands.
Key Features
- Natural language processing for PyMOL commands
- Ability to execute arbitrary Python code in PyMOL from Claude
- Molecular visualization control (representations, colors, views)
- Two-way communication between Claude AI and PyMOL
- Structural analysis capabilities (measurements, alignments)
Use Cases
- Automated manipulation of PyMOL through AI
- Conversational control of molecular visualization
- Performing structural analysis using natural language commands