Is authentication handled securely?

Yes, the skill follows security best practices, supporting both API Keys and OAuth 2.0 Client Credentials with patterns for environment variable-based credential storage.

How does this handle large-scale data operations?

It utilizes the Benchling Python SDK's built-in generator-based pagination and asynchronous task handling for efficient bulk data management and memory safety.

Does this skill require a Benchling account?

Yes, you must have an active Benchling tenant and valid API credentials (API Key or OAuth) to utilize the integration capabilities.

Can I manage biological sequences with this skill?

Absolutely. The skill supports creating, updating, and registering DNA, RNA, and protein sequences directly within the Benchling Registry.

Can this skill help automate lab workflows?

Yes, it provides implementation patterns for creating workflow tasks, updating statuses, and setting up event-driven triggers via AWS EventBridge to automate laboratory processes.

Benchling Integration

Name: Benchling Integration
Author: Activer007

byActiver007

Data Science & ML

Automates Benchling R&D platform operations including sequence management, inventory tracking, and lab notebook entries via Python SDK and REST API.

About

This skill enables seamless integration with the Benchling cloud platform, the industry standard for life sciences research and development. It provides Claude with specialized knowledge and implementation patterns to manage biological entities like DNA and proteins, automate laboratory inventory operations, interact with electronic lab notebooks (ELN), and orchestrate complex R&D workflows. Whether you are building custom Benchling Apps, syncing data with external warehouses, or setting up event-driven lab automations, this skill streamlines the development process with pre-configured authentication patterns and SDK best practices for scientific computing.

Key Features

0 GitHub stars
Workflow task orchestration and status synchronization
Programmatic access to Registry entities (DNA, RNA, proteins, mixtures)
Automated ELN entry creation and template management
Event-driven integration support via AWS EventBridge
Full inventory management for containers, plates, and storage locations

Use Cases

Syncing experimental results between Benchling and external data analysis pipelines
Bulk importing biological sequences from FASTA files into the Benchling Registry
Automating physical sample tracking and transfers across laboratory inventory

About

Key Features

0 GitHub stars
Workflow task orchestration and status synchronization
Programmatic access to Registry entities (DNA, RNA, proteins, mixtures)
Automated ELN entry creation and template management
Event-driven integration support via AWS EventBridge
Full inventory management for containers, plates, and storage locations

Use Cases

Syncing experimental results between Benchling and external data analysis pipelines
Bulk importing biological sequences from FASTA files into the Benchling Registry
Automating physical sample tracking and transfers across laboratory inventory