Is it compatible with the official Benchling Python SDK?

Yes, the skill is specifically designed to provide guidance and best practices for the official benchling-sdk for Python.

Can I manage biological sequences with this skill?

Absolutely. The skill supports creating, updating, and registering DNA, RNA, and protein (AA) sequences directly within the Benchling Registry.

Does this skill require a Benchling account?

Yes, you need an active Benchling tenant URL and either an API key or OAuth credentials to authenticate and use this integration.

Does it support bulk laboratory operations?

Yes, it provides implementation patterns for batch inventory transfers, bulk container creation, and asynchronous workflow task updates.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Microck

byMicrock

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108

Data Science & ML

Automates life sciences research workflows by integrating with the Benchling R&D platform for sample tracking, sequence management, and electronic lab notebooks.

About

This skill empowers researchers and bioinformaticians to programmatically interact with the Benchling cloud platform using its Python SDK and REST API. It provides a comprehensive framework for managing biological registry entities like DNA and proteins, automating laboratory inventory operations, and orchestrating complex experimental workflows. Whether you are syncing data to a warehouse, managing electronic lab notebook entries, or building event-driven lab automations via AWS EventBridge, this skill streamlines the connection between biological data and computational automation.

Key Features

Automated laboratory inventory management for samples, containers, and boxes
108 GitHub stars
Electronic Lab Notebook (ELN) entry creation and protocol documentation
Programmatic access to Benchling DNA, RNA, and AA sequence registries
SQL-based data warehouse querying for R&D analytics and reporting
Real-time event-driven integrations via AWS EventBridge and Python SDK

Use Cases

Automating sample transfers and inventory audits within laboratory locations
Building Benchling Apps that trigger downstream analysis when workflow tasks are completed
Bulk importing genetic sequences from FASTA files into the Benchling registry

About

Key Features

Automated laboratory inventory management for samples, containers, and boxes
108 GitHub stars
Electronic Lab Notebook (ELN) entry creation and protocol documentation
Programmatic access to Benchling DNA, RNA, and AA sequence registries
SQL-based data warehouse querying for R&D analytics and reporting
Real-time event-driven integrations via AWS EventBridge and Python SDK

Use Cases

Automating sample transfers and inventory audits within laboratory locations
Building Benchling Apps that trigger downstream analysis when workflow tasks are completed
Bulk importing genetic sequences from FASTA files into the Benchling registry