Manages and validates ontology term references for the Dismech knowledge base using the Ontology Access Kit.
This skill provides a specialized workflow for curators and developers working on the Dismech disease mechanisms knowledge base. It automates the process of finding, adding, and validating standardized ontology terms from authoritative sources like HPO, CL, GO, MONDO, and UBERON. By leveraging the Ontology Access Kit (OAK), the skill facilitates fuzzy searching for specific biological entities, ensures term ID accuracy, and maintains label consistency across YAML data files, significantly reducing manual errors in bioinformatics data curation.
Key Features
01Automated validation of ontology IDs and canonical label matching
0211 GitHub stars
03Batch identification of missing term annotations across the repository
04Automated term lookup for HPO, CL, GO, MONDO, and UBERON using OAK
05Standardized YAML block generation for phenotype and cell type entries
06Fuzzy search capabilities to identify the most specific biological terms
Use Cases
01Auditing and correcting label mismatches in existing knowledge base records
02Mapping biological processes to Gene Ontology (GO) IDs within mechanism files
03Annotating new disease YAML entries with precise Human Phenotype Ontology terms
