Does this skill support formatting tools?

Yes, it defaults to JuliaFormatter.jl using SciMLStyle or BlueStyle, ensuring that all code meets the repository's structural requirements.

What are the naming conventions enforced by this skill?

The skill ensures modules use CamelCase, functions and variables use snake_case, and constants use SCREAMING_SNAKE_CASE, while strictly prohibiting emojis in code.

How does this skill handle biological sequence data?

It enforces the use of specific BioSequences types like LongDNA{4} and LongAA, discouraging string conversions to maintain high performance in k-mer and assembly algorithms.

Why does this skill forbid the 'using' keyword in Julia?

To ensure maximum clarity and prevent symbol conflicts, the Mycelia style requires explicit imports and fully qualified names (e.g., DataFrames.DataFrame) rather than bringing entire namespaces into scope.

Julia Style Guide for Mycelia

Name: Julia Style Guide for Mycelia
Author: cjprybol

bycjprybol

•

Data Science & ML

Enforces strict Julia coding standards and import rules for high-performance multiomic analysis and biological data integration.

This skill provides Claude with the specific architectural patterns and coding conventions required for the Mycelia repository, a framework dedicated to multiomic analysis and biological characterization. It mandates a rigorous development style, including the use of fully qualified names over shorthand aliases, strict reliance on explicit imports instead of the 'using' keyword, and standardized naming conventions for modules and functions. By integrating domain-specific rules for BioSequences and HPC-optimized architectures, it ensures that all generated code is consistent, portable, and performant within Linux-based cloud environments.

Key Features

01Optimizes biological data handling with specific BioSequences type requirements

02Enforces fully qualified name usage to prevent namespace collisions

036 GitHub stars

04Standardizes naming conventions using CamelCase for modules and snake_case for functions

05Prevents type piracy and promotes pure function design patterns

06Automates adherence to 4-space indentation and explicit docstring formatting

Use Cases

01Building and maintaining multiomic analysis pipelines within the Mycelia framework

02Refactoring legacy Julia code to meet strict enterprise-grade repository standards

03Developing high-performance bioinformatics tools optimized for Linux-based HPC systems

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add cjprybol/mycelia julia-style

For use in Claude.ai and ChatGPT

Download Skill