Can I integrate this with Jupyter Notebooks?

Yes, the skill supports workflows to export Jupyter Notebook content and upload it directly as structured entries within LabArchives.

Can I automate file uploads to specific notebook entries?

Yes, the skill provides utilities to upload documents, images, and various scientific file formats (CSV, PDB, MOL, etc.) to specific entries.

Does this skill support regional LabArchives endpoints?

Yes, it supports US/International, Australian (AU), and UK regional API endpoints by configuring the appropriate api_url.

What are the prerequisites for using this LabArchives skill?

You need an Enterprise LabArchives license with API access enabled, along with an API access key ID and password provided by your administrator.

How is authentication handled securely?

Authentication uses API keys and user credentials stored in a local config.yaml file, which is generated through an interactive setup script.

LabArchives Integration

Name: LabArchives Integration
Author: jimmc414

byjimmc414

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324

Data Science & ML

Automates electronic lab notebook workflows by providing programmatic access to LabArchives for research data management and documentation.

About

The LabArchives Integration skill enables researchers and developers to orchestrate Electronic Lab Notebook (ELN) tasks directly through Claude. Part of the Kosmos AI Scientist framework, it simplifies complex REST API interactions for managing notebooks, entries, and file attachments. It is particularly useful for automating experimental data uploads, performing comprehensive notebook backups, and generating institutional compliance reports. By bridging the gap between computational tools and official documentation, this skill helps maintain a structured, searchable, and secure record of scientific discovery.

Key Features

Automated notebook backups and metadata retrieval
Third-party integration support for Jupyter and REDCap
Structured entry creation and file attachment management
Programmatic ELN access via REST API
324 GitHub stars
Institutional usage reporting and analytics

Use Cases

Performing scheduled, programmatic backups of institutional research notebooks
Synchronizing computational results from Jupyter Notebooks with official lab records
Automating experimental data uploads from laboratory instruments to ELNs

About

Key Features

Automated notebook backups and metadata retrieval
Third-party integration support for Jupyter and REDCap
Structured entry creation and file attachment management
Programmatic ELN access via REST API
324 GitHub stars
Institutional usage reporting and analytics

Use Cases

Performing scheduled, programmatic backups of institutional research notebooks
Synchronizing computational results from Jupyter Notebooks with official lab records
Automating experimental data uploads from laboratory instruments to ELNs