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Molecular Cell Data & Code Availability

brycewang-stanfordbybrycewang-stanford
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1.1k
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Learning & Documentation

Generates compliant Data and Code Availability statements and repository deposition plans for Molecular Cell and Cell Press manuscripts.

The Molecular Cell Data & Code Availability skill guides researchers through preparing compliant data and code deposition plans for Molecular Cell and Cell Press publications. It verifies that high-throughput sequencing (GEO/SRA), macromolecular structures (PDB/EMDB), proteomics (PRIDE), and custom analysis code (Zenodo/Mendeley Data) are properly archived with persistent accessions or DOIs before submission. By automating the exact tripartite format required under STAR Methods Resource Availability and cross-referencing entries against the Key Resources Table, this skill eliminates common submission blockers like generic 'available upon request' statements or missing structural factors.

Key Features

01Drafts standardized tripartite Data and Code Availability statements for STAR Methods
02Cross-checks repository accession numbers against the Key Resources Table
03Enforces public and citable DOI archiving for custom analysis scripts via Zenodo
04Validates structural biology deposition requirements for Cryo-EM and X-ray data
05Maps omics, structural, and image datasets to Cell Press-approved repositories
061,086 GitHub stars

Use Cases

01Preparing accession lists and deposition plans for multi-omics and structural datasets
02Archiving bioinformatics pipelines and custom code to generate citable Zenodo DOIs
03Drafting the mandatory Resource Availability subsection for a Molecular Cell manuscript