How do I troubleshoot a failed workflow?

The navigator points you toward the /pegasus-debug skill, which is optimized for diagnosing failures from Pegasus error logs and proposing fixes.

What kind of example workflows are available?

The navigator provides access to production-ready examples including TNSeq analysis, earthquake data fetching, machine learning training, and air quality monitoring.

Can this skill help me migrate from other workflow managers?

Yes, it directs you to the /pegasus-convert skill, which is specifically designed for migrating pipelines from Snakemake or Nextflow to Pegasus.

Which command should I use to start a new Pegasus project?

The navigator recommends using the /pegasus-scaffold command to generate a complete project structure, including generator scripts and Dockerfiles.

What is the purpose of the Pegasus Workflow Navigator?

It serves as a central hub within Claude to help you navigate the various Pegasus skills, providing guidance on which command to use for specific development tasks.

Pegasus Workflow Navigator

Name: Pegasus Workflow Navigator
Author: pegasus-isi

bypegasus-isi

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Learning & Documentation

Guides users through the Pegasus workflow toolkit by providing a centralized directory of specialized commands, examples, and reference materials.

The Pegasus Workflow Navigator acts as the primary command center for developers using the Pegasus AI toolkit within Claude. It provides a structured overview of all available specialized skills, helping users choose the right tool for scaffolding new projects, wrapping individual pipeline steps, or debugging execution failures. By offering instant access to production-grade examples and deep-dive reference documentation, this skill streamlines the process of building, migrating, and optimizing complex scientific and distributed computational workflows.

Key Features

01Decision support for selecting scaffolding, debugging, or conversion tools

02Contextual guidance for migrating workflows from Snakemake or Nextflow

030 GitHub stars

04Comprehensive directory of all Pegasus-specific Claude commands

05Navigation to in-depth reference guides for Pegasus concepts and patterns

06Direct links to production-ready workflow examples and templates

Use Cases

01Accessing curated examples for complex data processing and ML workflows

02Onboarding developers to the Pegasus scientific workflow management system

03Identifying the correct tool for specific pipeline development or troubleshooting stages

Key Features

01Decision support for selecting scaffolding, debugging, or conversion tools

02Contextual guidance for migrating workflows from Snakemake or Nextflow

030 GitHub stars

04Comprehensive directory of all Pegasus-specific Claude commands

05Navigation to in-depth reference guides for Pegasus concepts and patterns

06Direct links to production-ready workflow examples and templates

Use Cases

01Accessing curated examples for complex data processing and ML workflows

02Onboarding developers to the Pegasus scientific workflow management system

03Identifying the correct tool for specific pipeline development or troubleshooting stages