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PNAS Nexus Data & Code Availability

brycewang-stanfordbybrycewang-stanford
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1.1k
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Learning & Documentation

Enforces PNAS Nexus open-data compliance by verifying public repository deposition, code archiving, DOI citations, and compliant availability statements.

Streamlines compliance with PNAS Nexus's strict open-science mandates by guiding authors through the mandatory public-repository deposition of datasets, code, and protocols. This skill audits manuscripts to eliminate non-compliant 'available on request' clauses, ensures raw unprocessed imaging data is retained, generates correctly formatted Data and Code Availability Statements, and incorporates FORCE11 [dataset] citation tags to protect submissions against editorial rejection or retraction.

Key Features

01Formats reference lists using FORCE11 [dataset] citation tags for data as first-class objects
02Audits manuscripts for compliant Data and Code Availability Statements
03Maps specialized data types to approved public repositories such as GEO, PDB, and PRIDE
04Verifies raw image retention plans and unique material sharing protocols
05Ensures permanent DOI archiving on Zenodo or OSF for custom analysis scripts and code
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Use Cases

01Drafting or auditing a PNAS Nexus Data and Code Availability Statement prior to manuscript submission
02Verifying repository deposition accession numbers and Zenodo code DOIs for compliance
03Standardizing manuscript reference lists with proper [dataset] citation tags and RRIDs