Is authentication supported for private lab workspaces?

Yes, it supports both personal client access tokens for private content and OAuth flows for multi-user application integrations.

Does this skill support the latest protocols.io API?

Yes, it provides complete integration with protocols.io API version 3, including authentication, protocol management, and workspace endpoints.

Can I use this skill to publish protocols with a DOI?

Yes, the skill includes specialized guidance for the protocol publication lifecycle, allowing you to officially publish protocols and issue DOIs programmatically.

How does it handle file attachments and experimental data?

It includes dedicated file operations for uploading, organizing into folders, and linking experimental data or images to specific protocols or workspaces.

Can I export protocols in different formats for my own documentation?

Absolutely. The skill supports the content_format parameter, allowing you to retrieve protocol data in JSON, HTML, or Markdown formats.

Protocols.io Integration

Name: Protocols.io Integration
Author: lifangda

bylifangda

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Learning & Documentation

Streamlines scientific research by integrating the protocols.io API for managing, sharing, and discovering laboratory protocols directly within Claude Code.

About

This skill empowers researchers and laboratory teams to manage the entire lifecycle of scientific protocols through the protocols.io API v3. It enables seamless protocol discovery via DOI or keywords, facilitates collaborative development within team workspaces, and automates the documentation of experimental steps and materials. By integrating these capabilities into Claude Code, users can programmatically publish research, manage file attachments, and respond to community feedback, making it an essential tool for reproducible science and efficient lab management.

Key Features

Full API v3 integration for protocol creation, editing, and publishing with DOI issuance
Advanced discovery tools to search protocols by DOI, keywords, or research categories
Comprehensive management of protocol steps, reagents, and associated materials
Workspace and file organization for team-based collaboration and institutional repositories
Multi-format support for protocol content including JSON, HTML, and Markdown
16 GitHub stars

Use Cases

Automating the migration and backup of institutional protocol repositories
Collaborative development of standardized scientific procedures across distributed research teams
Documenting laboratory experiment executions and linking results to specific protocol versions

About

Key Features

Full API v3 integration for protocol creation, editing, and publishing with DOI issuance
Advanced discovery tools to search protocols by DOI, keywords, or research categories
Comprehensive management of protocol steps, reagents, and associated materials
Workspace and file organization for team-based collaboration and institutional repositories
Multi-format support for protocol content including JSON, HTML, and Markdown
16 GitHub stars

Use Cases

Automating the migration and backup of institutional protocol repositories
Collaborative development of standardized scientific procedures across distributed research teams
Documenting laboratory experiment executions and linking results to specific protocol versions