Does it integrate with standard scientific databases?

Absolutely. It provides standardized access to major databases such as OpenTargets, PubChem, UniProt, PDB, and ChEMBL.

How do I find specific tools within the ecosystem?

You can search for tools using natural language semantic search (Tool_Finder_LLM) or fast keyword-based searches (Tool_Finder_Keyword).

Can I use this for drug discovery workflows?

Yes, ToolUniverse supports complex drug discovery pipelines, including identifying disease targets, predicting structures with AlphaFold, and performing virtual screening.

What is the ToolUniverse Claude Code skill?

ToolUniverse is a specialized skill that allows Claude to discover and execute over 600 scientific tools across domains like bioinformatics, chemistry, and genomics.

ToolUniverse Scientific Research Skill

Name: ToolUniverse Scientific Research Skill
Author: Zehong-Wang

byZehong-Wang

0•

Data Science & ML

Empowers AI agents to conduct scientific research by providing standardized access to over 600 bioinformatics, cheminformatics, and genomics tools.

ToolUniverse is a comprehensive scientific ecosystem designed to transform AI models into capable research assistants. By offering a unified interface to over 600 specialized tools, databases, and machine learning models, it streamlines complex workflows in fields like drug discovery, structural biology, and proteomics. Users can discover tools via semantic search, execute precise computational biology tasks, and compose multi-step pipelines that connect disparate data sources like UniProt, PubChem, and AlphaFold into a cohesive research process, making it an essential skill for automated scientific discovery.

Key Features

01Access to 600+ curated scientific tools, models, and APIs.

02Standardized AI-Tool Interaction Protocol for seamless tool execution.

03Advanced tool discovery via natural language and semantic search.

04Automated multi-step workflow composition for complex research pipelines.

05Deep integration with major databases including PDB, ChEMBL, and UniProt.

060 GitHub stars

Use Cases

01Performing large-scale genomic analysis and pathway enrichment studies.

02Automating drug discovery pipelines from target identification to virtual screening.

03Predicting protein structures and analyzing molecular properties using AI models.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add zehong-wang/kosmos tooluniverse

For use in Claude.ai and ChatGPT

Download Skill