Pharmakon Discovery Engine FAQs

Question 1

What is the 4-layer cryptographic provenance system?

Accepted Answer

The cryptographic provenance system tracks and validates research findings across four layers, enforcing an automated 10-check quality-control gate to ensure every scientific figure and metric traces back to verifiable raw data.

Question 2

Does Pharmakon Discovery Engine support Model Context Protocol (MCP)?

Accepted Answer

Yes, PkDE includes a built-in MCP server (pkde-engine) that exposes six annotated execution and orchestration tools, allowing seamless integration with AI agent harnesses and automated workflow pipelines.

Question 3

How does the real-time visualization dashboard work?

Accepted Answer

Upon initiation, PkDE launches an interactive HTML dashboard powered by Server-Sent Events (SSE). It streams real-time updates every 0.5 seconds, displaying 20 scientific studios including 3D protein structures, binding pockets, ADMET radar plots, and an agent lineage forest.

Question 4

What is Pharmakon Discovery Engine (PkDE)?

Accepted Answer

Pharmakon Discovery Engine is a multi-agent pre-clinical drug discovery platform that coordinates 22 specialist subagents across 43 scientific domains, executing tasks in genetics, structural biology, cheminformatics, and DMPK through natural language prompts.

Question 5

Can I use proprietary compounds and private algorithms securely?

Accepted Answer

Yes, PkDE supports a bring-your-own-algorithm (BYOA) execution model, allowing researchers to evaluate private chemical structures and proprietary data within their local workspace without exposing sensitive IP.

Pharmakon Discovery Engine

主要功能

使用案例

Obsidian Connector

Resend

Magic

Background Coding Agent

Sherpa ONNX Local Text-to-Speech

1Password CLI