Which biological databases are supported?

It supports over 40 services, including major ones like UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO, and many NCBI/EBI resources.

What is BioServices used for in Claude Code?

BioServices allows Claude to write scripts that programmatically interact with dozens of biological databases, making it easier to automate data retrieval and analysis for bioinformatics projects.

Can I map UniProt IDs to KEGG using this skill?

Yes, identifier mapping is a core capability. You can easily convert IDs between databases like UniProt, KEGG, Ensembl, and ChEMBL.

Does this skill support sequence alignment tools?

Yes, it provides programmatic access to NCBI BLAST and other alignment services like MUSCLE via their respective web interfaces.

Do I need to handle REST or SOAP protocols manually?

No, BioServices handles both REST and SOAP/WSDL protocols transparently, providing a clean Pythonic API for all supported services.

BioServices Bioinformatics API

Name: BioServices Bioinformatics API
Author: Activer007

byActiver007

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数据科学与机器学习

Simplifies programmatic access to over 40 bioinformatics web services and databases using a unified Python interface.

BioServices is a powerful Python package designed to streamline biological data retrieval and analysis by providing a standardized API for over 40 major bioinformatics resources. It enables developers and researchers to perform cross-database queries, map complex biological identifiers, analyze metabolic pathways, and search chemical compounds across platforms like UniProt, KEGG, ChEMBL, and NCBI. By abstracting the complexities of REST and SOAP/WSDL protocols, this skill allows for the seamless integration of global biological data into automated Python workflows and data science pipelines.

主要功能

01Automated protein sequence retrieval and functional annotation

02Comprehensive identifier mapping between disparate biological databases

03Metabolic pathway discovery and protein-protein interaction analysis

04Support for sequence similarity searches like BLAST and MUSCLE alignment

05Unified access to 40+ biological services including UniProt, KEGG, and ChEMBL

061 GitHub stars

使用场景

01Mapping chemical compound IDs across multiple databases for drug discovery workflows

02Automating the extraction of protein data and annotations for genomic research

03Constructing biological interaction networks by integrating data from multiple pathway databases

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add activer007/ordinary-claude-skills bioservices

For use in Claude.ai and ChatGPT

Download Skill