What is Chemical Organization Theory (COT)?

COT is a mathematical framework used to describe the organization of reaction networks and identify subsets of species that are self-maintaining and closed.

Can this skill help with biological modeling?

Yes, it is specifically built to model autopoietic systems, synthetic biology, and the resilience of metabolic pathways.

How does it verify autopoiesis?

It uses self-production metrics and boundary formation detection to verify that a system can maintain its own organization against external perturbations.

Which programming language does this skill use?

The implementation is primarily designed for Julia, utilizing its capabilities for stoichiometric matrices and spatial PDE integration.

Chemical Organization Theory (COT) Modeler

Name: Chemical Organization Theory (COT) Modeler
Author: plurigrid

byplurigrid

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数据科学与机器学习

Implements Chemical Organization Theory to model, simulate, and verify self-maintaining autopoietic systems through reaction-diffusion dynamics.

This skill enables Claude to implement and analyze Chemical Organization Theory (COT) for modeling complex, self-organizing systems. It provides the mathematical tools to define stoichiometric reaction networks, detect organizational closure, and simulate spatial reaction-diffusion patterns. Designed for researchers and developers working in artificial life, biological modeling, and topological computing, this skill helps verify the self-production and resilience of autopoietic systems using a rigorous categorical approach.

主要功能

01Spatial reaction-diffusion simulation with PDE integration

027 GitHub stars

03Organizational closure and self-maintenance detection

04Stoichiometric reaction network construction and analysis

05Organizational hierarchy and resilience mapping

06Autopoietic system verification and boundary maintenance metrics

使用场景

01Simulating pattern formation and Turing instabilities in chemical systems

02Modeling synthetic biological systems to verify self-sustaining properties

03Analyzing the organizational stability of complex reaction networks

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add plurigrid/asi chemical-organization-theory

For use in Claude.ai and ChatGPT

Download Skill